Publications are color coded by fields:
A: Atmospheric Physics; B: Biology/Bioinformatics; C: Chemistry; G: Geosciences; I: Informatics; M: Mathematics; P: Physics
A: Atmospheric Physics; B: Biology/Bioinformatics; C: Chemistry; G: Geosciences; I: Informatics; M: Mathematics; P: Physics
PIs in bold; students & post-docs in bold and italics
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2024
Mazzucchelli M., E. Moulas, B.J.P. Kaus, T. Speck. Fluid-mineral equilibrium under nonhydrostatics stress: Insight from molecular dynamics. American Journal of Science 324, 2 (2024). doi:10.2475/001c.92881
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Zhang Y., A. Stovas, L. De Siena. Wavefield simulation and reverse time migration for acoustic TTI media. Geophysics 89 (2024). doi:10.1190/geo2023-0137.1
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Changiarath A., J. Michels, R. Herrera Rodriguez, S.M. Hanson, F. Schmid, J. Padeken, L.S. Stelzl. Conditions for the co-existence of promoter and gene-body condensates. BioRxiv. doi:10.1101/2024.03.16.585180
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Krüger M., A. Mishra, P. Spichtinger, U. Pöschl, T. Berkemeier. A numerical compass for experiment design in chemical kinetics and molecular property estimation. Journal of Cheminformatics 16, 34 (2024). doi:10.1186/s13321-024-00825-0
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2023
Bachmayr M., S. Boisserée, L.M. Kreusser. Analysis of nonlinear poroviscoelastic flows with discontinuous porosities. Nonlinearity 36 (12) (2023). doi:10.1088/1361-6544/ad0871
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Gonçalves-Kulik M., F. Schmid, M.A. Andrade-Navarro. One Step Closer to the Understanding of the Relationship IDR-LCR-Structure. Genes. 14(9), 1711 (2023). doi:10.3390/genes14091711
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Flores-Solis D., I.P. Lushpinskaia, A.A. Polyansky, A. Changiarath, M. Boehning, M. Mirkovic, J. Walshe, L.M. Pietrek, P. Cramer, L.S. Stelzl, B. Zagrovic, M. Zweckstetter. Driving forces behind phase separation of the carboxy-terminal domain of RNA polymerase II. Nature Communications 14, 5979 (2023). doi:10.1038/s41467-023-41633-8
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Lemcke S., J.H. Appeldorn, M. Wand, T. Speck. Toward a structural identification of metastable molecular conformations. The Journal of Chemical Physics 159 (11), 114106 (2023). doi:10.1063/5.0164145
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Sourpis A.I., N.C. Forero-Martinez, F. Schmid. The Effect of Electric Fields on the Structure of Water/Acetonitrile Mixtures. The Journal of the Electrochemical Society 170(8), 083508. doi:10.1149/1945-7111/acef61
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2022
Gerber S., L. Pospisil, S. Sys, C. Hewel, A. Torkamani, I. Horenko. Co-inference of data mislabelings reveals improved models in genomics and breast cancer diagnostics. Frontiers in Artificial Intelligence 4 (2022). doi:10.3389/frai.2021.739432
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Sys S., S. Weißbach, L. Jakob, S. Gerber, C. Schneider. CollembolAI, a macrophotography and computer vision workflow to digitize and characterize samples of soil invertebrate communities preserved in fluid. Methods in Ecology and Evolution 13, 2729-2742 (2022). doi:10.1111/2041-210X.14001
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Feireisl E., M. Lukáčová-Medvidova, S. Schneider, B. She. Approximating viscosity solutions of the Euler system. Mathematics of Computation 91, 2129-2164 (2022). doi:10.1090/mcom/3738
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Gonçalves-Kulik M., P. Mier, K. Kastano, J. Cortés, P. Bernadó, F. Schmid, M.A. Andrade-Navarro. Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered. Biomolecules 12, 1098 (2022). doi:10.3390/biom12081098
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Bauer D.J., L. Stelzl, A. Nikoubashman. Single-chain and condensed-state behavior of hnRNPA1 from molecular simulations. J. Chem. Phys. 157, 154903 (2022). doi:10.1063/5.0105540
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Niebler S., A. Miltenberger, B. Schmidt, P. Spichtinger. Automated detection and classification of synoptic scale fronts from atmospheric data grids. Weather and Climate Dynamics 3, 113-137 (2022). doi:10.5194/wcd-3-113-2022
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Moulas E., B.J.P. Kaus, B. Jamtveit. Dynamic Pressure Variations in the Lower Crust Caused by Localized Fluid-Induced Weakening. Communications Earth and Environment 3:157, 1-7 (2022). doi:10.1038/s43247-022-00478-7
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Di Martino M.P., L. De Siena, N. Tisato. Pore Space Topology Controls Ultrasonic Waveforms in Dry Volcanic Rocks. Geophysical Research Letters 49 (2022). doi:10.1029/2022GL100310
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2021
Chen C., M.K. Singh, K. Wunderlich, S. Harvey, C. Whitfield, Z. Zhou, M. Wagner, K. Landfester, I. Lieberwirth, G. Fytas, K. Kremer, D. Mukherji, D.Y.W. Ng, T. Weil. Polymer cyclization for the emergence of hierarchical nanostructures. Nature Communications 12, 3959 (2021). doi:10.1038/s41467-021-24222-5
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Weißbach S., S. Sys, C. Hewel, H. Todorov, S. Schweiger, J. Winter, M. Pfenninger, A. Torkamani, D. Evans, J. Burger, K. Everschor-Sitte, H. May-Simera, S. Gerber. Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines. BMC Genomics 22, 62 (2021). doi:10.1186/s12864-020-07362-8
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Rodrigues D.R., K. Everschor-Sitte, S. Gerber, I. Horenko. A deeper look into natural sciences with physics-based and data-driven measures. iScience 24, 3 (2021). doi:10.1016/j.isci.2021.102171
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Li B., K. Daoulas, F. Schmid. Dynamic coarse-graining of polymer systems using mobility functions. Journal of Physics: Condensed Matter 33, 194004 (2021). doi:10.1088/1361-648X/abed1b
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Datta R., L. Yelash, F. Schmid, F. Kummer, M. Oberlack, M. Lukáčová-Medvidova, P. Virnau. Shear-thinning in oligomer melts-molecular origin and applications. Polymers 13(16), 2806 (2021). doi:10.3390/polym13162806
![](http://model.uni-mainz.de/files/2024/03/MP-150x150.png)
Bockius N., J. Shea, G. Jung, F. Schmid, M. Hanke. Model reduction techniques for the computation of extended Markov parameterizations for generalized Langevin equations. Journal of Physics: Condensed Matter 33, 214003 (2021). doi:10.1088/1361-648X/abe6df
![](http://model.uni-mainz.de/files/2024/03/MP-150x150.png)
Grulich L., R. Weigel, A. Hildebrandt, M. Wand, P. Spichtinger. Automatic shape detection of ice crystals. Journal of Computational Science, 54, 101429 (2021). doi: 10.1016/j.jocs.2021.101429
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Kottwitz M.O., A.A. Popov, S. Abe, B.J.P. Kaus. Investigating the effects of intersection flow localization in equivalent-continuum-based upscaling of flow in discrete fracture networks. Solid Earth 12, 2235–2254 (2021). doi:10.5194/se-12-2235-2021
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G.S. Reuber. Statistical and deterministic inverse methods in the geosciences: introduction, review, and application to the nonlinear diffusion equation. GEM International Journal on Geomathematics 12:19 (2021). doi:10.1007/s13137-021-00186-y
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2020
G.S. Reuber, L. Holbach, A.A. Popov, M. Hanke, B.J.P. Kaus. Inferring rheology and geometry of subsurface structures by adjoint-based inversion of principal stress directions. Geophys. J. International 223.2 (2020): 851-861. doi:10.1093/gji/ggaa344
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Jangizehi A., F. Schmid, P. Besenius, K. Kremer, S. Seiffert. Defects and defect engineering in soft matter. Soft Matter 16, 10809-10859 (2020). doi:10.1039/d0sm01371d
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Fischer A., F. Schmid, T. Speck. Quorum-sensing active particles with discontinuous motility. Physical Review E 101, 012601 (2020). doi:10.1103/PhysRevE.101.012601
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Stieffenhofer M., M. Wand, T. Bereau. Adversarial reverse mapping of equilibrated condensed-phase molecular structures. Machine Learning: Science and Technology 1 (4), 045014 (2020). doi:10.1088/2632-2153/abb6d4
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Rosemeier J., P. Spichtinger. Pattern formation in clouds via Turing instabilities. Mathematics of Climate and Weather Forecasting 6, 75-96 (2020). doi:10.1515/mcwf-2020-0104
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2019
Chertock A., A. Kurganov, M. Lukáčová-Medvidova, P. Spichtinger, B. Wiebe. Stochastic Galerkin method for cloud simulation. Mathematics of Climate and Weather Forecasting 5, 65-106 (2019). doi:10.1515/mcwf-2019-0005
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Baumgartner M., M. Sagebaum, N. Gauger, P. Spichtinger, A. Brinkmann. Algorithmic differentiation for cloud schemes (IFS Cy43r3) using CoDiPack (v1.8.1). Geoscientific Model Development 12, 5197-5212 (2019). doi:10.5194/gmd-12-5197-2019
![](http://model.uni-mainz.de/files/2024/03/AM-150x150.png)